{"id":24301,"date":"2018-03-14T15:12:49","date_gmt":"2018-03-14T15:12:49","guid":{"rendered":"https:\/\/old.icar.org\/?page_id=24301"},"modified":"2023-05-13T11:33:39","modified_gmt":"2023-05-13T11:33:39","slug":"presentations-auckland-conference-12-february","status":"publish","type":"page","link":"https:\/\/old.icar.org\/index.php\/icar-meetings-news\/auckland-2018-home-page\/presentations-auckland-conference-12-february\/","title":{"rendered":"Presentations Auckland Conference 12 February"},"content":{"rendered":"<p>The page collects the presentations of the ICAR-WCGALP joint sessions held in Auckland, NZ, on\u00a0 11-16February 2018<\/p>\n<h4>Plenary Session<\/h4>\n<ul>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/0830 jeremy howard.pdf\">From machine learning to deep learning<\/a><br \/>\nJeremy Howard<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<h4>Biology &#8211; Growth and Development &#8211; Joint with ICAR<\/h4>\n<ul>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1000 Luiz Lehmann Coutinho.pdf\">Integration of GWAS, CNV and selection signature reveals candidate genes for abdominal fat regulation in chickens<\/a><br \/>\nLuiz Lehmann Coutinho<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1030 Maria Munoz.pdf\">Protein restriction modifies differentially the liver transcriptome at different stages of the growing period of Duroc x Iberian crossbred pigs<\/a><br \/>\nMaria Mu\u00f1oz<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1045 Siri Storteig Horn.pdf\">Selection of fatty acid composition in muscle of Atlantic salmon<\/a><br \/>\nSiri Horn<\/li>\n<li>Molecular and cellular mechanisms that underlie genes and antioxidant enzyme activities in meat-type birds during heat stress<br \/>\nSamuel Aggrey<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1115 Clarissa Dreher.pdf\">Genome-wide association studies using BayesC and estimation of genetic parameters for perinatal sucking reflex in Brown Swiss calves<\/a><br \/>\nClarissa Dreher<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1130 Madeline Zimmermann.pdf\">Modelling Growth from Weaning to Maturity in Beef Cattle Breeds<\/a><br \/>\nMadeline Zimmermann<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1145 Tiphaine Mace.pdf\">Clustering and genetic analysis of body reserves changes throughout productive cycles in meat sheep<\/a><br \/>\nTiphaine Mac\u00e9<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<h4>Method and Tools &#8211; Models and Computing Strategies &#8211; Joint with Interbull<strong>\u00a0<\/strong><\/h4>\n<ul>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1000 Zengting Liu.pdf\">A SNP MACE model for international genomic evaluation: technical challenges and possible solutions<\/a><br \/>\nZengting Liu<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1015 Jorgen Odegrad.pdf\">A single-step principal component ridge regression model for large-scale genomic evaluations<\/a><br \/>\nJorgen Odegard<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1030 Ignacy.pdf\">Extension of single-step ssGBLUP to many genotyped individuals<\/a><br \/>\nIgnacy Misztal<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1100 Jeremie vandenplas.pdf\">Deflated preconditioned conjugate gradient method for solving single-step single nucleotide polymorphism BLUP<\/a><br \/>\nJeremie Vandenplas<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1115 Viktor Milkevuch.pdf\">Efficient block-Gibbs sampling in variance component estimation for predictions which combine phenotypic and genomic information<\/a><br \/>\nViktor Milkevych<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1130 Matti Taskinen.pdf\">Numerically efficient fully orthogonalized Single-step SNP-BLUP<\/a><br \/>\nMatti Taskinen<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1145 Daniel Garrick.pdf\">Accuracies of contrasts between estimated breeding values of selection candidates from national cattle evaluations using pedigree or single-step genomic methodology<\/a><br \/>\nDaniel Garrick<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<h4>Biology &amp; Species &#8211; Bovine (Dairy) &#8211; Joint with ICAR<\/h4>\n<ul>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1000 Dr Yutaka Masuda.pdf\">Pre-selection bias and validation method in single-step GBLUP for production traits in US Holstein<\/a><br \/>\nYutaka Masuda<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1030 Irene Van Den.pdf\">Using expression data to detect small QTL in dairy cattle<\/a><br \/>\nIrene van den Berg<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1100 Nina Poulsen.pdf\">Genetic parameter estimation of high value milk proteins and whey to casein ratio in Danish Holstein<\/a><br \/>\nNina Aagaard Poulsen<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1115 Anil Sigdel.pdf\">Genetic analysis of heat tolerance for production and health traits in US Holstein cows<\/a><br \/>\nAnil Sigdel<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1130 Allison Quick.pdf\">Development of a genomic reference population for bovine respiratory disease in pre-weaning dairy calves using thoracic ultrasonography<\/a><br \/>\nAllison Quick<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1145 Andrew Marete.pdf\">Exploring non-additive variance using genome-wide dense SNP in four French and Nordic dairy cattle breeds<\/a><br \/>\nAndrew Marete<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<h4>Theory to Application &#8211; Joint with ICAR<\/h4>\n<ul>\n<li><strong>\u00a0<\/strong><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1000 Ross Evens.pdf\">Experiences with large scale implementation of genomic selection in a predominantly crossbred beef population<\/a><br \/>\nRoss Evans<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1015 David Johnston.pdf\">Implementation of single-step genomic BREEDPLAN evaluations in Australian beef cattle<\/a><br \/>\nDavid Johnston<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1030 Diane Buisson.pdf\">Genomic selection in practice in French Lacaune dairy sheep<\/a><br \/>\nDiane Buisson<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1045 Gota Morota.pdf\">Stronger measures of genomic connectedness enhance prediction accuracies across management units<\/a><br \/>\nGota Morota<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1100 Marc Teissier.pdf\">Weighted single-step GBLUP improves accuracy of genomic predictions for traits controlled by major gene or QTL in French dairy goats<\/a><br \/>\nMarc Teissier<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1115 Jeremy Howard.pdf\">The impact of utilizing previous generations of genotyped animals in genomic selection<\/a><br \/>\nJeremy Howard<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1130 Tara Carthy.pdf\">A new dairy cattle mating advice for Ireland which incorporates genomic information<\/a><br \/>\nTara Carthy<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1145 Smaragda Tsairidou.pdf\">Enhancing genetic disease control by selecting for lower host infectivity<\/a><br \/>\nSmaragda Tsairidou<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<h4>Methods and Tools \u2013 Software &#8211; Joint with Interbull<\/h4>\n<ul>\n<li><strong>\u00a0<\/strong><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1330 Karin Meyer.pdf\">Wrestling with a WOMBAT: Selected new features for mixed model analyses in the genomic age<\/a><br \/>\nKarin Meyer<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1345 Ignacio.pdf\">BLUPF90 suite of programs for animal breeding with focus on genomics<\/a><br \/>\nIgnacio Aguilar<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1400 Nicolas Frioni.pdf\">Factors affecting phasing quality in a commercial layer population<\/a><br \/>\nNicolas Frioni<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1415 Dorian Garrick.pdf\">An introduction to BOLT software for genetic and genomic evaluations<\/a><br \/>\nDorian Garrick<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1430 James Chen.pdf\">GWAS and GS Are as Easy as Clicking and Dragging with iPat<\/a><br \/>\nJames Chen<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1445 Arthur Gilmour.pdf\">Echidna Mixed Models Software<\/a><br \/>\nArthur Gilmour<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1500 Ismo.pdf\">Efficient single-step BLUP computations with MiX99 software<\/a><br \/>\nIsmo Stranden<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1515 Hao Cheng.pdf\">JWAS: Julia implementation of Whole-genome Analyses Software<\/a><br \/>\nHao Cheng<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<h4>Biology \u2013 Reproduction &#8211; Joint with ICAR<\/h4>\n<ul>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1330 Stefan Hiendieder.pdf\">Effects of conceptus sex and genetics on circulating thyroid hormones and IGFs in heifers at mid gestation depend on maternal genetic background<\/a><br \/>\nStefan Hiendleder<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1400 Brenda Murdoch.pdf\">Meiotic Recombination in Ruminant Livestock Species<\/a><br \/>\nBrenda Murdoch<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1415 Magdalena Serrano.pdf\">Deciphering the role of vaginal and sperm metagenome in the success of artificial insemination in sheep<\/a><br \/>\nMagdalena Serrano<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1430 Younes Miar.pdf\">Application of Metabolomics on Selecting for Litter Size in American Mink (Neovison vison)<\/a><br \/>\nShannon Spencer<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1445 Cassie Ferring.pdf\">Genomic analysis of reproductive traits in health challenged commercial sow herds<\/a><br \/>\nCassandra Ferring<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1500 Sofia Nyman.pdf\">Genome-Wide Associations for Progesterone Profiles in Holstein-Friesian Cows<\/a><br \/>\nSofia Nyman<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1515 Gabriele Marras.pdf\">Identification of unfavourable homozygous haplotypes associated with with milk and fertility traits in Holsteins<\/a><br \/>\nGabriele Marras<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<h4>Method and Tools \u2013 Prediction &#8211; Joint with Interbull<\/h4>\n<ul>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1600 Mike Goddard.pdf\">The use of multi-breed reference populations and multi-omic data to maximize accuracy of genomic prediction<\/a><br \/>\nMike Goddard<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1630 Thomas Lopdell.pdf\">Using RNAseq data to improve genomic selection in dairy cattle<\/a><br \/>\nThomas Lopdell<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1645 Bevin Harris.pdf\">The use of sequence SNP in a marker model for an across-breed dairy cattle genomic evaluation<\/a><br \/>\nBevin Harris<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1700_Aoxing Liu.pdf\">Using additional single nucleotide polymorphisms selected from whole genome sequence data for genomic prediction in Danish Jersey<\/a><br \/>\nAoxing Liu<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1715 Dr Nasir-Moghaddar.pdf\">Genomic evaluation based on selected variants from imputed whole-genome sequence data in Australian sheep populations<\/a><br \/>\nNasir Moghaddar<\/li>\n<li>Exploiting sequence variants for genomic prediction in Australian sheep using Bayesian models<br \/>\nMajid Khansefid<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1745 Breno Fragomeni.pdf\">Use of causative variants and SNP weighting in a single-step GBLUP context<\/a><br \/>\nBreno De Oliveira Fragomeni<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<h4>Biology &#8211; Disease Resistance &#8211; Joint with ICAR<\/h4>\n<ul>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1600 Hermann Swalv.pdf\">Estimation of genomic breeding values for the susceptibility to digital dermatitis in Holstein dairy cattle using improved methods for phenotyping<\/a><br \/>\nHermann Swalv<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1615 Francesca Malchiodi.pdf\">Genome-wide association study and functional analysis of infectious and horn type hoof lesions in Canadian Holstein cattle<\/a><br \/>\nFrancesca Malchiodi<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1630 Florence Phocas.pdf\">Genetic analysis of calf vitality, survival and disease resistance in Charolais beef cattle<\/a><br \/>\nFlorence Phocas<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1645 Christa Kuehn.pdf\">ChronMast &#8211; a model to study functional genetic variation of mastitis susceptibility<\/a><br \/>\nChrista Kuehn<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1700 Juan Cordero.pdf\">Detection of candidate regions affecting bovine IgM natural antibodies in milk<\/a><br \/>\nJuan Cordero-Solorzano<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1715 Bonnie Mallard.pdf\">Genome-Wide Association and Functional Annotation of Positional Candidate Genes for Immune Response in Canadian Holstein Cattle<\/a><br \/>\nBonnie Mallard<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1730 Scott.pdf\">Genome-wide associations of immune-associated traits in dairy cows<\/a><br \/>\nScott Denholm<\/li>\n<li><a href=\"https:\/\/old.icar.org\/Documents\/Auckland-2018\/WCGALP\/1745 John Cole.pdf\">Genome-wide association study and gene network analysis of fertility, retained placenta, and metritis in US Holstein cattle<\/a><br \/>\nJohn Cole<\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>The page collects the presentations of the ICAR-WCGALP joint sessions held in Auckland, NZ, on\u00a0 11-16February 2018 Plenary Session From machine learning to deep learning Jeremy Howard &nbsp; Biology &#8211; Growth and Development &#8211; Joint with ICAR Integration of GWAS, CNV and selection signature reveals candidate genes for abdominal fat regulation in chickens Luiz Lehmann [&hellip;]<\/p>\n","protected":false},"author":4,"featured_media":0,"parent":19513,"menu_order":105,"comment_status":"closed","ping_status":"closed","template":"","meta":{"advgb_blocks_editor_width":"","advgb_blocks_columns_visual_guide":"","_relevanssi_hide_post":"","_relevanssi_hide_content":"","_relevanssi_pin_for_all":"","_relevanssi_pin_keywords":"","_relevanssi_unpin_keywords":"","_relevanssi_related_keywords":"","_relevanssi_related_include_ids":"","_relevanssi_related_exclude_ids":"","_relevanssi_related_no_append":"","_relevanssi_related_not_related":"","_relevanssi_related_posts":"","_relevanssi_noindex_reason":"","_genesis_hide_title":false,"_genesis_hide_breadcrumbs":false,"_genesis_hide_singular_image":false,"_genesis_hide_footer_widgets":false,"_genesis_custom_body_class":"","_genesis_custom_post_class":"","_genesis_layout":""},"categories":[],"tags":[],"acf":[],"coauthors":[],"author_meta":{"author_link":"https:\/\/old.icar.org\/index.php\/author\/cesare\/","display_name":"cesare"},"relative_dates":{"created":"Posted 8 years ago","modified":"Updated 3 years ago"},"absolute_dates":{"created":"Posted on 14 March 2018","modified":"Updated on 13 May 2023"},"absolute_dates_time":{"created":"Posted on 14 March 2018 15:12","modified":"Updated on 13 May 2023 11:33"},"featured_img_caption":"","featured_img":false,"series_order":"","featured_image_src":null,"featured_image_src_square":null,"_links":{"self":[{"href":"https:\/\/old.icar.org\/index.php\/wp-json\/wp\/v2\/pages\/24301"}],"collection":[{"href":"https:\/\/old.icar.org\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/old.icar.org\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/old.icar.org\/index.php\/wp-json\/wp\/v2\/users\/4"}],"replies":[{"embeddable":true,"href":"https:\/\/old.icar.org\/index.php\/wp-json\/wp\/v2\/comments?post=24301"}],"version-history":[{"count":0,"href":"https:\/\/old.icar.org\/index.php\/wp-json\/wp\/v2\/pages\/24301\/revisions"}],"up":[{"embeddable":true,"href":"https:\/\/old.icar.org\/index.php\/wp-json\/wp\/v2\/pages\/19513"}],"wp:attachment":[{"href":"https:\/\/old.icar.org\/index.php\/wp-json\/wp\/v2\/media?parent=24301"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/old.icar.org\/index.php\/wp-json\/wp\/v2\/categories?post=24301"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/old.icar.org\/index.php\/wp-json\/wp\/v2\/tags?post=24301"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}